A modify version of PSR, we use the same algorithm described in PSR paper¹⁾.

• rongzhengqin@basepedia.com

• utils (BasePedia internal code library)
• bamio (BasePedia internal code library)

In linux bash sell, use followed script to execute.

snippet.bash

python psr_parse_all.py sampleinfo.xls misa.outputfile .PSR.counts.txt SSR_count

• sampleinfo.xls, a data format to record sample information, defined by BasePedia
• misa.outputfile, MISA software output
• .PSR.counts.txt, output suffix
• SSR_count, samples' bam files directory