To detect DNA fragments integration,such as T-DNA insertion,transgene integration
tar zxvf Insertsite-1.0.0.tar.gz cd Insertsite-1.0.0 python setup.py build python setup.py install
In linux bash sell, use followed script to execute.
insertsite --hostgenome hostgenome.fa --targetgenome targetgenome.fa --fq1 sample.fq1.fq.gz --fq2 sample.fq2.fq.gz --libsize 500